=====================================================================
Found a 103 line (445 tokens) duplication in the following files: 
Starting at line 134 of /usr/local/dashboard/working/build/src/org/cougaar/tools/javadoc/EventTaglet.java
Starting at line 134 of /usr/local/dashboard/working/build/src/org/cougaar/tools/javadoc/PropertyTaglet.java
    PropertyTaglet tag = new PropertyTaglet();
    Taglet t = (Taglet) tagletMap.get(tag.getName());
    if (t != null) {
      tagletMap.remove(tag.getName());
    }
    tagletMap.put(tag.getName(), tag);
  }

  /**
   * Given the <code>Tag</code> representation of this custom
   * tag, return its string representation.
   * @param tag he <code>Tag</code> representation of this custom tag.
   */
  public String toString(Tag tag) {
    Tuple t = new Tuple(tag);
    return "<DT><B>" + SINGULAR_HEADER + "</B><DD>"
      + "<table cellpadding=2 cellspacing=0><tr valign=\"top\">"+
      "<td>"+ t.param +"</td>"+
      "<td>"+ t.text +"</td>"+
      "</tr></table></DD>\n";
  }
    
  /**
   * Given an array of <code>Tag</code>s representing this custom
   * tag, return its string representation.
   * @param tags the array of <code>Tag</code>s representing of this custom tag.
   */
  public String toString(Tag[] tags) {
    if (tags.length == 0) {
      return null;
    }
    String result = "\n<DT><B>" + (tags.length == 1 ? SINGULAR_HEADER : PLURAL_HEADER) + "</B><DD>";
    result += "<table cellpadding=2 cellspacing=0>";
    for (int i = 0; i < tags.length; i++) {
      Tuple t = new Tuple((Tag)tags[i]);
      result += "<tr valign=\"top\"><td>"+ t.param +"</td>"+
        "<td>"+ t.text +"</td></tr>";
    }
    return result + "</table></DD>\n";
  }

  public static class Tuple implements Comparable
  {
    public Tag tag;
    public String param = null;
    public String text = null;
    public final static String white = " \t\n\r"; // whitespace chars
    public Tuple(Tag tag) {
      this.tag = tag;

      String tt = tag.text();
      int i;
      int l = tt.length();
      int state =0;             // what are we looking for?
      int p0=-1,p1=-1,t0=-1;

      // scan the tag text
      for (i=0;i<l;i++) {
        char c = tt.charAt(i);
        boolean isWhite = (white.indexOf(c)>=0);
        switch (state) {
        case 0:                 // looking for param start
          if (!isWhite) {
            p0=i;
            state=1;
          }
          break;
        case 1:                 // looking for param end
          if (isWhite) {
            p1 = i;
            state=2;
          }
          break;
        case 2:                 // looking for text start
          if (!isWhite) {
            t0 = i;
            state=3;
          }
          break;
        default:                // shouldn't get here
          break;
        }
        if (state==3) break;
      }

      if (t0>=0) {
        param = tt.substring(p0,p1);
        text = tt.substring(t0);
      } else {
      }
    }

    public int compareTo(Object o) {
      if (!(o instanceof Tuple)) return -1;
      Tuple t = (Tuple) o;
      int v = param.compareTo(t.param);
      if (v != 0) return v;

      return 0;
    }        
  }

}
=====================================================================
Found a 71 line (356 tokens) duplication in the following files: 
Starting at line 128 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/MeasureWriter.java
Starting at line 78 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
    public Writer(PGParser p) {
      this.p = p;
      try {
        filelist = new PrintWriter(new OutputStreamWriter(new FileOutputStream(new File(getTargetDir(),getGenFileName()))));
        noteFile(getGenFileName());
      } catch (IOException ioe) { throw new RuntimeException(); }
    }
    public void noteFile(String s) {
      println(filelist,s);
    }
    public void done() {
      filelist.close();
    }

    void grokGlobal() {
    }

    /** convert a string like foo_bar_baz to FooBarBaz **/
    String toClassName(String s) {
      StringBuffer b = new StringBuffer();
      boolean isFirst = true;

      for (int i = 0; i < s.length(); i++) {
        char c = s.charAt(i);
        if (c == '_') {
          isFirst= true;
        } else {
          if (isFirst && Character.isLowerCase(c))
            c = Character.toUpperCase(c);
          isFirst=false;
          b.append(c);
        }
      }

      return b.toString();
    }

    /** convert a string like foo_bar_baz to fooBarBaz **/
    String toVariableName(String s) {
      StringBuffer b = new StringBuffer();
      boolean isFirst = true;
      boolean isStart = true;

      for (int i = 0; i < s.length(); i++) {
        char c = s.charAt(i);
        if (c == '_') {
          isFirst= true;
        } else {
          if (isStart && isFirst && Character.isLowerCase(c))
            c = Character.toUpperCase(c);
          isFirst=false; isStart=false;
          b.append(c);
        }
      }

      return b.toString();
    }

    /** convert a string like foo_bar_baz to FOO_BAR_BAZ **/
    String toConstantName(String s) {
      StringBuffer b = new StringBuffer();

      for (int i = 0; i < s.length(); i++) {
        char c = s.charAt(i);
        if (Character.isLowerCase(c))
          c = Character.toUpperCase(c);
        b.append(c);
      }

      return b.toString();
    }
=====================================================================
Found a 51 line (220 tokens) duplication in the following files: 
Starting at line 170 of /usr/local/dashboard/working/build/src/org/cougaar/tools/javadoc/CougaarDoclet.java
Starting at line 182 of /usr/local/dashboard/working/build/src/org/cougaar/tools/javadoc/EventTaglet.java
      this.tag = tag;

      String tt = tag.text();
      int i;
      int l = tt.length();
      int state =0;             // what are we looking for?
      int p0=-1,p1=-1,t0=-1;

      // scan the tag text
      for (i=0;i<l;i++) {
        char c = tt.charAt(i);
        boolean isWhite = (white.indexOf(c)>=0);
        switch (state) {
        case 0:                 // looking for param start
          if (!isWhite) {
            p0=i;
            state=1;
          }
          break;
        case 1:                 // looking for param end
          if (isWhite) {
            p1 = i;
            state=2;
          }
          break;
        case 2:                 // looking for text start
          if (!isWhite) {
            t0 = i;
            state=3;
          }
          break;
        default:                // shouldn't get here
          break;
        }
        if (state==3) break;
      }

      if (t0>=0) {
        param = tt.substring(p0,p1);
        text = tt.substring(t0);
      } else {
      }
    }

    public int compareTo(Object o) {
      if (!(o instanceof Tuple)) return -1;
      Tuple t = (Tuple) o;
      int v = param.compareTo(t.param);
      if (v != 0) return v;

      return 0;
=====================================================================
Found a 31 line (203 tokens) duplication in the following files: 
Starting at line 369 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 480 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
                  "  implements "+className+", Future_PG\n"+
                  "{");
      // declare the slots
      Vector slotspecs = getAllSlotSpecs(context);
      Enumeration se = slotspecs.elements();
      while (se.hasMoreElements()) {
        String slotspec = ((String)se.nextElement()).trim();
        int s = slotspec.indexOf(" ");
        String type = slotspec.substring(0,s);
        String name = slotspec.substring(s+1);
        ActiveSlot as = parseActiveSlot(slotspec);
        if (as != null) {
          name = as.name;
        }
        String etype = null;
        CollectionType ct = parseCollectionType(type);
        if (ct != null) {
          type = ct.ctype;
          etype = ct.etype;
        }
        String clname = toClassName(name);
        
        String slotdoc = null;
        String depp = (String)p.get(context,name+".deprecated");
        if (depp != null) {
          slotdoc="@deprecated "+depp;
        }
        if (slotdoc!=null) 
          println(out,"  /** "+slotdoc+" **/");
        if (as!=null) {
          println(out,"  public "+type+" "+as.getterSpec()+"{\n"+
=====================================================================
Found a 18 line (139 tokens) duplication in the following files: 
Starting at line 88 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/MeasureWriter.java
Starting at line 103 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGParser.java
  public void parse(InputStream s, boolean top) throws IOException {
    InputStreamReader isr = new InputStreamReader(s);
    BufferedReader br = new BufferedReader(isr);
    String context = "global";
    int i;
    
    getContext(context);
    for (String line = br.readLine(); line != null; line=br.readLine()) {
      line = line.trim();
      if (line.length() == 0 || line.startsWith(";")) {
        // empty or comment line
      }  else {
        while (line.endsWith("\\")) {
          String more = br.readLine();
          if (more == null) throw new IOException("Unexpected EOF");
          line = line.substring(0,line.length()-1)+more.trim();
        }
        if (line.startsWith("includedefs")) {
=====================================================================
Found a 20 line (131 tokens) duplication in the following files: 
Starting at line 263 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 373 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
      Vector slotspecs = getAllSlotSpecs(context);
      Enumeration se = slotspecs.elements();
      while (se.hasMoreElements()) {
        String slotspec = ((String)se.nextElement()).trim();
        int s = slotspec.indexOf(" ");
        String type = slotspec.substring(0,s);
        String name = slotspec.substring(s+1);
        ActiveSlot as = parseActiveSlot(slotspec);
        if (as != null) {
          name = as.name;
        }
        String etype = null;
        CollectionType ct = parseCollectionType(type);
        if (ct != null) {
          type = ct.ctype;
          etype = ct.etype;
        }
        String clname = toClassName(name);
        
        String slotdoc = null;
=====================================================================
Found a 22 line (123 tokens) duplication in the following files: 
Starting at line 370 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 651 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
      println(out,"public interface "+newclassName+" "+extendstring+" {");

      // declare the slots
      Vector slotspecs = getAllSlotSpecs(context);
      Enumeration se = slotspecs.elements();
      while (se.hasMoreElements()) {
        String slotspec = ((String)se.nextElement()).trim();
        int s = slotspec.indexOf(" ");
        String type = slotspec.substring(0,s);
        String name = slotspec.substring(s+1);
        ActiveSlot as = parseActiveSlot(slotspec);
        if (as != null) {
          name = as.name;
        }
        String etype = null;
        CollectionType ct = parseCollectionType(type);
        if (ct != null) {
          type = ct.ctype;
          etype = ct.etype;
        }
        
        String depp = (String)p.get(context,name+".deprecated");
=====================================================================
Found a 19 line (122 tokens) duplication in the following files: 
Starting at line 263 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 654 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
      Vector slotspecs = getAllSlotSpecs(context);
      Enumeration se = slotspecs.elements();
      while (se.hasMoreElements()) {
        String slotspec = ((String)se.nextElement()).trim();
        int s = slotspec.indexOf(" ");
        String type = slotspec.substring(0,s);
        String name = slotspec.substring(s+1);
        ActiveSlot as = parseActiveSlot(slotspec);
        if (as != null) {
          name = as.name;
        }
        String etype = null;
        CollectionType ct = parseCollectionType(type);
        if (ct != null) {
          type = ct.ctype;
          etype = ct.etype;
        }
        
        String depp = (String)p.get(context,name+".deprecated");
=====================================================================
Found a 18 line (120 tokens) duplication in the following files: 
Starting at line 1041 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 1195 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
        se = slotspecs.elements();
        while (se.hasMoreElements()) {
          String slotspec = ((String)se.nextElement()).trim();
          int s = slotspec.indexOf(" ");
          String type = slotspec.substring(0,s);
          String name = slotspec.substring(s+1);
          ActiveSlot as = parseActiveSlot(slotspec);
          if (as != null) {
            name = as.name;
          }
          String etype = null;
          CollectionType ct = parseCollectionType(type);
          if (ct != null) {
            type = ct.ctype;
            etype = ct.etype;
          }

          if (as != null) {
=====================================================================
Found a 19 line (116 tokens) duplication in the following files: 
Starting at line 263 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 853 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
      println(out,"  // Slots\n");
      Enumeration se = slotspecs.elements();
      while (se.hasMoreElements()) {
        String slotspec = ((String)se.nextElement()).trim();
        int s = slotspec.indexOf(" ");
        String type = slotspec.substring(0,s);
        String name = slotspec.substring(s+1);
        ActiveSlot as = parseActiveSlot(slotspec);
        if (as != null) {
          name = as.name;
        }
        String etype = null;
        CollectionType ct = parseCollectionType(type);
        if (ct != null) {
          type = ct.ctype;
          etype = ct.etype;
        }

        String var = (String)p.get(context,name+".var");
=====================================================================
Found a 18 line (115 tokens) duplication in the following files: 
Starting at line 1041 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 1166 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
      se = slotspecs.elements();
      while (se.hasMoreElements()) {
        String slotspec = ((String)se.nextElement()).trim();
        int s = slotspec.indexOf(" ");
        String type = slotspec.substring(0,s);
        String name = slotspec.substring(s+1);
        ActiveSlot as = parseActiveSlot(slotspec);
        if (as != null) {
          name = as.name;
        }
        String etype = null;
        CollectionType ct = parseCollectionType(type);
        if (ct != null) {
          type = ct.ctype;
          etype = ct.etype;
        }

        if (type.equals("String")) {
=====================================================================
Found a 19 line (114 tokens) duplication in the following files: 
Starting at line 1194 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 1283 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
	      implclassName + ".this.equals(object); }");
      
      // dispatch getters
      se = slotspecs.elements();
      while (se.hasMoreElements()) {
        String slotspec = ((String)se.nextElement()).trim();
        int s = slotspec.indexOf(" ");
        String type = slotspec.substring(0,s);
        String name = slotspec.substring(s+1);
        ActiveSlot as = parseActiveSlot(slotspec);
        if (as != null) {
          name = as.name;
        }
        String etype = null;
        CollectionType ct = parseCollectionType(type);
        if (ct != null) {
          type = ct.ctype;
          etype = ct.etype;
        }
=====================================================================
Found a 18 line (114 tokens) duplication in the following files: 
Starting at line 265 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 1286 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
      se = slotspecs.elements();
      while (se.hasMoreElements()) {
        String slotspec = ((String)se.nextElement()).trim();
        int s = slotspec.indexOf(" ");
        String type = slotspec.substring(0,s);
        String name = slotspec.substring(s+1);
        ActiveSlot as = parseActiveSlot(slotspec);
        if (as != null) {
          name = as.name;
        }
        String etype = null;
        CollectionType ct = parseCollectionType(type);
        if (ct != null) {
          type = ct.ctype;
          etype = ct.etype;
        }

        String getter = "get"+toClassName(name);
=====================================================================
Found a 16 line (113 tokens) duplication in the following files: 
Starting at line 265 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 1041 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
      se = slotspecs.elements();
      while (se.hasMoreElements()) {
        String slotspec = ((String)se.nextElement()).trim();
        int s = slotspec.indexOf(" ");
        String type = slotspec.substring(0,s);
        String name = slotspec.substring(s+1);
        ActiveSlot as = parseActiveSlot(slotspec);
        if (as != null) {
          name = as.name;
        }
        String etype = null;
        CollectionType ct = parseCollectionType(type);
        if (ct != null) {
          type = ct.ctype;
          etype = ct.etype;
        }
=====================================================================
Found a 20 line (110 tokens) duplication in the following files: 
Starting at line 1041 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 1447 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
        String clname = toClassName(context);

        while (se.hasMoreElements()) {
          String slotspec = ((String)se.nextElement()).trim();
          int s = slotspec.indexOf(" ");
          String type = slotspec.substring(0,s);
          String name = slotspec.substring(s+1);
          ActiveSlot as = parseActiveSlot(slotspec);
          if (as != null) {
            name = as.name;
          }
          String etype = null;
          CollectionType ct = parseCollectionType(type);
          if (ct != null) {
            type = ct.ctype;
            etype = ct.etype;
          }


          if (as == null) {
=====================================================================
Found a 16 line (110 tokens) duplication in the following files: 
Starting at line 412 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/MeasureWriter.java
Starting at line 692 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/MeasureWriter.java
        println(out,"  public static final "+className+" new"+unitName+"(double v) {");
        println(out,"    return new "+className+"(v"+fexpr+");");
        println(out,"  }");
        println(out,"  public static final "+className+" new"+unitName+"(String s) {");
        println(out,"    return new "+className+"((Double.valueOf(s).doubleValue())"+fexpr+");");
        println(out,"  }");
      }
      println(out);

      // common unit support - mostly a bogon
      println(out);
      println(out,"  public int getCommonUnit() {");
      String cus = p.get(context, "common");
      if (cus == null) { 
        println(out,"    return 0;");
      } else {        
=====================================================================
Found a 20 line (109 tokens) duplication in the following files: 
Starting at line 1166 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 1447 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
        String clname = toClassName(context);

        while (se.hasMoreElements()) {
          String slotspec = ((String)se.nextElement()).trim();
          int s = slotspec.indexOf(" ");
          String type = slotspec.substring(0,s);
          String name = slotspec.substring(s+1);
          ActiveSlot as = parseActiveSlot(slotspec);
          if (as != null) {
            name = as.name;
          }
          String etype = null;
          CollectionType ct = parseCollectionType(type);
          if (ct != null) {
            type = ct.ctype;
            etype = ct.etype;
          }


          if (as == null) {
=====================================================================
Found a 17 line (107 tokens) duplication in the following files: 
Starting at line 265 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
Starting at line 1447 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/PGWriter.java
        String clname = toClassName(context);

        while (se.hasMoreElements()) {
          String slotspec = ((String)se.nextElement()).trim();
          int s = slotspec.indexOf(" ");
          String type = slotspec.substring(0,s);
          String name = slotspec.substring(s+1);
          ActiveSlot as = parseActiveSlot(slotspec);
          if (as != null) {
            name = as.name;
          }
          String etype = null;
          CollectionType ct = parseCollectionType(type);
          if (ct != null) {
            type = ct.ctype;
            etype = ct.etype;
          }
=====================================================================
Found a 22 line (103 tokens) duplication in the following files: 
Starting at line 527 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/MeasureWriter.java
Starting at line 866 of /usr/local/dashboard/working/build/src/org/cougaar/tools/build/MeasureWriter.java
      println(out,"      return (theValue*"+dtC+".convFactor[unit2]/"+dC+".convFactor[unit1]);");
      println(out,"    else");
      println(out,"      throw new UnknownUnitException();");
      println(out,"  }");
      println(out);

      // equals et al
      println(out,"  public boolean equals(Object o) {");
      println(out,"    return ( o instanceof "+className+" &&");
      println(out,"             theValue == (("+className+") o).theValue);");
      println(out,"  }");
      println(out,"  public String toString() {");
      println(out,"    return Double.toString(theValue) + \""+
                  baseabbrev+"\";");
      println(out,"  }");
      println(out,"  public int hashCode() {");
      println(out,"    return (new Double(theValue)).hashCode();");
      println(out,"  }");
      println(out);

      // derivative implementation
      println(out,"  // Derivative");